Flow Cell Tile Numbering

When the tiles are imaged during the sequencing run, an output file is generated for each tile and named with the tile number in a four-digit format. With the exception of the nano flow cell, flow cells are imaged on the top and bottom surface. The output files for each tile are located in the run folder in Data\Intensities\BaseCalls\L001.

Flow Cell	MiSeq Reagent Kit	Tiles	Imaging Surface	Image File Names
Standard Flow Cell PGS Flow Cell	MiSeq Reagent Kits, v3	1-19	Top	1101 through 1119
		1-19	Bottom	2101 through 2119
Standard Flow Cell	MiSeq Reagent Kits, v2	1-14	Top	1101 through 1114
		1-14	Bottom	2101 through 2114
Micro Flow Cell	MiSeq Reagent Micro Kits, v2	1–4	Top	1101 through 1104
		1–4	Bottom	2101 through 2104
Nano Flow Cell	MiSeq Reagent Nano Kits, v2	1–2	Top only	1101 through 1102