Run Metrics
Run metrics appear on the Sequencing screen at different points in a run. During cluster generation steps, no metrics appear.
After sequencing begins, the following metrics appear at the indicated cycles:
|
Metric |
Kit |
Cycle |
|---|---|---|
|
Intensity |
MiSeq Reagent Kits, v3 MiSeq Reagent Kits, v2 |
Cycle 1–7 Cycle 1–4 Cycle 1–4 |
|
Intensity and Cluster Density |
MiSeq Reagent Kits, v3 MiSeq Reagent Kits, v2 |
Cycle 8–25 Cycle 5–25 Cycle 5–25 |
|
Intensity, Cluster Density, % PF, Yield, and Q-scores |
MiSeq Reagent Kits, v3 MiSeq Reagent Kits, v2 |
Cycle 26 through run completion |
For MiSeq run specifications, visit the MiSeq System specifications page on the Illumina website.
