Monitor Run Progress
You can monitor run progress or cancel a run on the Sequencing screen. You can monitor run progress on-instrument or using Illumina Run Manager. If you have cloud run monitoring enabled, you can view run progress in BaseSpace Sequence Hub. To view additional run details and run status, refer to Run Management.
To view additional metrics and visualizations, use the Sequencing Analysis Viewer (SAV). For more information, refer to the Sequencing Analysis Viewer support site page.
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Monitor run status on the Sequencing screen or the Active tab in the Runs screen. |
The Sequencing screen contains the estimated run completion time, which requires 10 previous runs to calculate accurate run completion time.
The Active tab on the Runs screen includes the time the process was started and additional information on the run status. The status indicates which of the following activities are in progress:
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Sequencing data transfer to external storage |
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Secondary analysis data transfer to external storage |
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Monitor the following metrics on the Sequencing or Runs screen.
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Run metrics are not available until cycle 26 of Read 1.
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% ≥ Q30—The average percentage of base calls with a Q-score ≥ 30. |
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Projected yield—The expected number of bases called for the run. |
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Total reads PF—The number of paired-ends (if applicable) reads passing filtering (in millions). |
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Total % demux—The percentage of PF reads demultiplexed for the run. This metric is only available for planned runs or runs with imported sample sheets. |
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To review any additional run details, select the run name on the Sequencing screen or the Active tab in the Runs screen. |
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After the run completes, you can view additional run results by selecting the run name on the Sequencing screen or the Completed tab in the Runs screen. |
To eject consumables after a run completes, refer to Eject Used Consumables.
