Checks for Array Scans

System Checks	Recommended Action
Doors Closed	Make sure that the compartment doors are closed.
Consumables Loaded	Consumable sensors do not register. Make sure that each consumable is properly loaded. On the run setup screens, select Back to return to the loading step, and repeat run setup.
Required Software	Critical components of the software are missing. Perform a manual software update to restore all software components.
Verify Input Files	Make sure that the path to the cluster file and manifest file is correct and the files are present.
Instrument Disk Space	The instrument hard drive does not have sufficient disk space to perform a run. It is possible that data from a previous run did not transfer. Clear run data from the instrument hard drive.
Network Connection	The network connection has been interrupted. Check network status and the physical network connection.
Network Disk Space	Either the BaseSpace account is full or the network server is full.

Imaging System	Recommended Action
Imaging Limits	Contact Illumina Technical Support.
Z Steps-and-Settle	Contact Illumina Technical Support.
Bit Error Rate	Contact Illumina Technical Support.
Auto-Center	Unload the BeadChip adapter. Make sure that the BeadChip is seated in the adapter, and then reload the adapter.