Hybridize Probes
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This step adds capture probes to pooled libraries to target regions of interest. The procedure uses enrichment reagents and oligos from an enrichment panel.

• | EHB2 (Enrichment Hyb Buffer 2) |
• | NHB2 (Hyb Buffer 2 + IDT NXT Blockers) |
• | Illumina Viral Surveillance Panel v2 panel |
• | 96-well PCR plate, semiskirted |
• | Microseal 'B' adhesive film |

• | NHB2 |
– | Precipitates and separates during storage. |
– | Follow the preparation instructions before first use. |

1. | Preheat the microheating system to 50°C. |
2. | Prepare the following consumables: |
• | EHB2—Vortex to mix. If crystals and cloudiness are observed, repeat vortex, or pipette up and down to mix well until the solution is clear. |
• | NHB2—Vortex to mix. Lay in the preheated microheating system and incubate for 5 minutes. |
• | Illumina Viral Surveillance Panel v2—Vortex to mix. |
3. | Mix preheated NHB2 as follows. |
a. | Vortex three times for 10 seconds each time. |
b. | Pipette to resuspend fully. Keep warm until use to prevent the reformation of precipitates. |
4. | If EHB2 or NHB2 appears crystallized or cloudy, vortex or pipette until clear. |
5. | Save the following HYB program on the thermal cycler: |
• | Choose the preheat lid option and set to 100°C |
• | Set the reaction volume to 25 µl |
• | 95°C for 5 minutes |
• | 18 cycles of 1 minute each: |
• | 94°C for the first cycle |
• | Decrease 2°C per subsequent cycle |
• | 58°C for 90 minutes |
• | Hold at 58°C for ≤ 24 hours |
Total running time is ~115 minutes.

1. | Add the following |
• | Three-plex pre-enriched library pool (7.5 µl) |
• | NHB2 (12.5 µl) |
• | Illumina Viral Surveillance Panel v2 (2.5 µl) |
• | EHB2 (2.5 µl) |
2. | Pipette 10 times to mix, and then seal. |
3. | Centrifuge at 280 × g for 3 seconds. |
EHB2 can make the reaction appear cloudy, which is normal.
4. | Place on the preprogrammed thermal cycler and run the HYB program. |
5. | Allow to incubate at 58°C for 90 minutes to 24 hours. |
Each well contains a volume of 25 µl.
If the reaction falls below room temperature precipitates can form, impacting the run results.