Sequencing Report
The system generates a Sequencing Report for the sequencing run when sequencing completes or sequencing times out.
|
Column |
Description |
Type |
Regex |
|---|---|---|---|
|
batch_name |
Batch name. |
text |
^[a-zA-Z0-9_-]{1,36}$ |
|
pool_barcode |
Pool barcode associated with sequencing run. |
text |
^[a-zA-Z0-9_-]{1,36}$ |
|
instrument |
Sequencer serial number. |
text |
^[a-zA-Z0-9_ -]{1,36}$ |
|
flowcell |
Flow cell associated with sequencing run. |
text |
^[a-zA-Z0-9_ -]{1,36}$ |
|
software_version |
Concatenation of software application/version used to generate the data on the sequencer. |
text |
|
|
run_folder |
Sequencing run folder name. |
text |
^[a-zA-Z0-9_ -]+$ |
|
sequencing_status |
Sequencing run status. |
enum |
completed | timed out | failed |
|
qc_status |
QC status of sequencing run. |
enum |
pass | fail | error |
|
qc_reason |
QC reasons for QC failure, semicolon-separated values. |
text |
^[a-zA-Z0-9_ -]{1,36}$ |
|
cluster_density |
Cluster density (median per flow cell across tiles). |
float |
|
|
pct_q30 |
Percent bases above Q30. |
float |
|
|
pct_pf |
Percent reads passing filter. |
float |
|
|
phasing |
Phasing. |
float |
|
|
prephasing |
Prephasing. |
float |
|
|
predicted_aligned_reads |
Predicted aligned reads. |
long |
|
|
started |
Timestamp associated with sequencing start. |
ISO 8601 timestamp |
|
|
completed |
Timestamp associated with sequencing completion. |
ISO 8601 timestamp |
