Running BCL Convert

Use the following instructions to run BCL Convert.

1.

Open a command-line window.

2.

Enter the following command and add options as needed:

nohup /usr/local/bin/bcl-convert

For example, the following command line populates the output directory with FASTQ files:

nohup /usr/local/bin/bcl-convert -bcl-input-directory

<RunFolder> --output-directory <OutputDirectory>

The Illumina DRAGEN Bio-IT Platform support pages on the Illumina support site provides additional information.