IPP Integration v2.8 Package Installation

The BaseSpaceLIMS-Ilumina-Preset-Protocols RPM package provides instructions for locating and running the /opt/gls/clarity/config/illumina-preset-protocols-installer.sh bash script that launches the IPP configuration installer.

The RPM package automatically installs template files that are used with Template File Generator (TFG) and Sample Placement Helper. These template files are accessible after the applicable configuration is installed. The files are installed at the following locations:

• /opt/gls/clarity/extensions/conf/driverfiletemplates
• /opt/gls/clarity/extensions/conf/infinium/placementpatterns
• /opt/gls/clarity/extensions/conf/covid

The RPM package automatically installs the CLPA automation that is used for the CLPA integration. This automation is installed at the following location:

/opt/gls/clarity/extensions/unified-product-analytics/automation.

If this is a new Clarity LIMS installation, you must install the QC_Protocols before the preconfigured workflows. The base configuration is included in the standard installation process.

After you have selected a workflow, the installer validates the import of that workflow and provides Warning/Error details in STDOUT. This process allows you to proceed with the import or cancel it.

Before installing the RPM package, make sure that the following software is installed:

• Clarity LIMS v6.2 or later
• NGS-Package v5.25 or later
• SecretUtil v1.2. For more information, refer to Guide to Secret Management in the Clarity LIMS Core Functionality documentation.
1. On the server used for the IPP RPM installation, log in as the root user.
2. Use the following yum command to install the RPM:

The --enablerepo in the command line must be included to enable the repo. The Illumina Support team provides the repo file and the appropriate name to use.

yum install BaseSpaceLIMS-Illumina-Preset-Protocols --enablerepo=<< repo name info from support >>

3. When prompted to proceed with the RPM package installation, enter y to confirm.

For information on running the installer and supported commands, parameters, and options, refer to Installer Parameters and Operations.