MiSeq Integration v8.1 Validation and Troubleshooting

The following sections explain how to validate the installation of the Illumina MiSeq Integration Package v8.1.

The validation involves the following processes:

Running samples through the Library Prep Validation v2.0.4 workflow. The workflow contains a single-step protocol that models the library prep required to produce normalized libraries. At the end of the step, the normalized libraries automatically advance to the MiSeq Sequencing v3.1 workflow.
Running normalized libraries through the MiSeq Sequencing v3.1 workflow. This process validates the following information:
Automated generation of a sample sheet for use with the MiSeq Control Software (MCS) and Local Run Manager.
Automated tracking of the MiSeq sequencing run and parsing of run statistics into Clarity LIMS, including the following information:
Run status and metrics of sequencing run
Sequencing run parameters
Real-Time Analysis (RTA) v1 run directory location and other run-specific information