|
1.
|
In Lab View, locate the Library Prep Validation v2.0.2 protocol. The samples are queued for the Library Prep Validation v2.0.2 step. |
|
2.
|
Add the samples to the Ice Bucket and select View Ice Bucket. |
|
3.
|
On the Ice Bucket screen, select the label groups to use. |
|
•
|
TruSeq HT Adapters v2 (D7-D5) is the default label group delivered by Library Prep Validation v2.0.2 protocol. |
|
•
|
For other reagent labels (indexes), manually create them in the Configuration screen under Consumables → Labels. |
For more information on how to create reagent label group, refer Clarity LIMS documentation.
|
5.
|
On the Placement screen: |
|
a.
|
In the Placed Samples area in the Container field, scan or enter the barcode of the destination container. |
|
b.
|
Select the samples from the Samples to be Placed area, then drag them over to the container wells on the right. |
|
6.
|
On the Add Labels screen, the Labels to Add list is populated with labels from the TruSeq HT Adapters v2 (D7-D5) label group. This label group is the only one configured in the out-of-the-box integration. It is used by default in this step. |
|
a.
|
Select labels on the left, and drag them over to the container on the right to assign them to placed samples. |
|
b.
|
Select Record Details. |
|
7.
|
On the Record Details screen: |
|
a.
|
In the Sample Details table, enter values for Molarity (nM) for all the individual sample. Type values individually or use the copy/paste functionality to enter multiple values from a spreadsheet. |
|
•
|
Molarity (nM) values are used in Calculate Volume automation script in Library Pooling and Dilution (NextSeq 1000/2000 Sequencing v1.1) step. |
|
b.
|
The Sequencing Instrument column indicates the instrument to be used for the run. Select NextSeq 1000/2000. |
|
c.
|
Populate the fields in this column using one of the following methods: |
|
•
|
To populate fields individually for each sample, select from the drop-down list in each row. |
|
•
|
To populate fields all at one time, use the Copy and Paste buttons to enter multiple values from a spreadsheet (see the following note). |
Alternatively, select inside the table and press Ctrl + A to select all rows. At the top of the table, select Sequencing Instrument, then select NextSeq 1000/2000 from the adjacent drop-down list. Select Apply.
If you are working with many samples, you can use the copy/paste functionality to enter multiple values from a spreadsheet.
|
a.
|
Select the Copy button to copy the sample information from Clarity LIMS to the clipboard. |
|
b.
|
Open a blank Excel document and paste the contents of the clipboard into the spreadsheet. |
|
c.
|
In the spreadsheet, enter the Molarity (nM) and Sequencing Instrument values. Select the entire spreadsheet, including the headers, (Ctrl + A) and copy (Ctrl + C) the information to the clipboard. |
|
d.
|
In Clarity LIMS, select the Paste button. Paste the contents of the clipboard (Ctrl + V) into the Update Table window and then select Update to paste into the Sample Details table. |
This selection triggers the Next Steps automation, which sets the value of the next step (for all samples) to Remove from workflow. The Routing Script automation expects this value and requires it to advance samples to the next step successfully.
|
9.
|
On the Assign Next Steps screen in the Samples table, the Next Step for all samples is prepopulated with Remove from workflow. |
Do not change this value. If Next Step is not set to Remove from workflow, the routing script is not able to route samples correctly.
On exit from the step, the Routing Script automation is triggered. This automation assigns samples to the first step of the NextSeq 1000/2000 Sequencing v1.1 workflow, which is Library Pooling and Dilution (NextSeq 1000/2000 Sequencing v1.1) step.
Run Library Prep Validation v2.0.2 Step
