Inversions

Inversions are reported as a set of breakends. For example, given a simple reciprocal inversion, four breakends are reported, sharing the same EVENT INFO tag. The following is an example breakend records representing a simple reciprocal inversion:

chr1 17124941 MantaBND:1445:0:1:1:3:0:0 T [chr1:234919886[T 999 PASS SVTYPE=BND;MATEID=MantaBND:1445:0:1:1:3:0:1;CIPOS=0,1;HOMLEN=1;
HOMSEQ=T;INV5;EVENT=MantaBND:1445:0:1:0:0:0:0;JUNCTION_QUAL=254;BND_DEPTH=107;
MATE_BND_DEPTH=100 GT:FT:GQ:PL:PR:SR 0/1:PASS:999:999,0,999:65,8:15,51
chr1 17124948 MantaBND:1445:0:1:0:0:0:0 T T]chr1:234919824] 999 PASS SVTYPE=BND;MATEID=MantaBND:1445:0:1:0:0:0:1;INV3;EVENT=MantaBND:1445:0:1:0:0:0:0;
JUNCTION_QUAL=999;BND_DEPTH=109;MATE_BND_DEPTH=83 GT:FT:GQ:PL:PR:SR 0/1:PASS:999:999,0,999:60,2:0,46
chr1 234919824 MantaBND:1445:0:1:0:0:0:1 G G]chr1:17124948] 999 PASS SVTYPE=BND;MATEID=MantaBND:1445:0:1:0:0:0:0;INV3;EVENT=MantaBND:1445:0:1:0:0:0:0;
JUNCTION_QUAL=999;BND_DEPTH=83;MATE_BND_DEPTH=109 GT:FT:GQ:PL:PR:SR 0/1:PASS:999:999,0,999:60,2:0,46
chr1 234919885 MantaBND:1445:0:1:1:3:0:1 A [chr1:17124942[A 999 PASS SVTYPE=BND;MATEID=MantaBND:1445:0:1:1:3:0:0;CIPOS=0,1;HOMLEN=1;
HOMSEQ=A;INV5;EVENT=MantaBND:1445:0:1:0:0:0:0;JUNCTION_QUAL=254;BND_DEPTH=100;
MATE_BND_DEPTH=107 GT:FT:GQ:PL:PR:SR 0/1:PASS:999:999,0,999:65,8:15,51