Configuration Files

You can store command line options in a configuration file. The location of the default configuration file is /opt/edico/config/dragen-user-defaults.cfg. To specify a different file, use the --config-file (-c) option. The configuration file used for a given run supplies the default settings for that run. You can override any of the default settings using command line options.

DRAGEN recommends using the dragen-user-defaults.cfg as a template to create default settings for different use cases. Create your configuration file as follows.

Create a copy of dragen-user-defaults.cfg, and then rename the copy.

Modify the new configuration file according to your use case.

Make sure to modify your copy of dragen-user-defaults.cfg, not the original file.

DRAGEN recommends only adding options that do not change per run. Use the command line to specify options that vary per run.

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Document #200014386 v01

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Illumina DRAGEN Bio-IT Platform v3.10

dragen-v310

dragen-platform-v3.10-guide-200014386-01.pdf