Amplicon BED File
The DRAGEN Amplicon Pipeline requires an amplicon BED file and all input files required by the DRAGEN DNA pipeline. Each row in an amplicon BED file describes an amplicon target. The following fields are required.
|
Field |
Description |
|---|---|
|
chrom |
The name of the chromosome. |
|
chromStart |
The 0-based inclusive start position of the target, excluding the primer. |
|
chromEnd |
The 0-based exclusive end position of the target, excluding the primer. |
|
name |
The name of the amplicon target. |
|
gene |
[Optional] The gene ID. |
|
targetType |
[Optional] The target type. |
