Run SAV

Use the following instructions to launch SAV and load data.

1. Open SAV using the instructions for your operating system.
2. Select Browse, and then select your run from your runs folder.

If using a NovaSeq X Series System, the runs folder is located in usr/local/illumina/mnt/runs.

3. Select Select Folder.

SAV launches using the information from your run folder.

4. To use a different run folder, select Browse on the top toolbar.

SAV uses the following files from the run output folder as input:

• RunInfo.xml
• RunParameters.xml
• InterOp files. InterOp files provide the following information:
– Extraction metrics
– Quality metrics
– Error metrics
– Tile metrics
– Extended tile metrics
– Corrected intensity metrics
– Image metrics
– Index metrics
– Empirical phasing metrics
• [Optional] Thumbnails