Sample Manifest JSON

To set up the sampleManifest.json to use in the CLI, use the following structure.

Copy 
{
    "files": [
        {
            "lane": "1",
            "library": "NA03813_proband",
            "read1": "NA03813_proband_S1_L001_R1_001.fastq.gz",
            "read2": "NA03813_proband_S1_L001_R2_001.fastq.gz",
            "readGroup": "NA03813_proband_L1_210524_A01298_0060_AH5FL3DRXY"
        },
        {
            "lane": "2",
            "library": "NA03813_proband",
            "read1": "NA03813_proband_S1_L002_R1_001.fastq.gz",
            "read2": "NA03813_proband_S1_L002_R2_001.fastq.gz",
            "readGroup": "NA03813_proband_L2_210524_A01298_0060_AH5FL3DRXY"
        }
    ]
}