Scanning Process Overview

This section provides an overview of the steps involved in scanning BeadChips with the iScan System.

1. Download the DMAP files (decode data) for your BeadChips as follows.
a. Download the Decode File Client from your MyIllumina account.
b. Use the Illumina Decode File Client to download the DMAP files.
2. Start the iScan System. For more information, refer to Start the iScan System.
3. Load the BeadChips onto a carrier, load the carrier into the iScan Reader tray, and scan the BeadChip carrier barcodes. For more information, refer to Load BeadChips.

This process does not describe how to use the AutoLoader with the iScan System to automate BeadChip loading. For more information, refer to the AutoLoader 2.x User Guide (document # 15015394).

4. If necessary, select a different image format, scan settings, data normalization settings, and input/output path. Make sure that input and output paths are correct. For more information, refer to Configure iScan Control Software.
5. Scan BeadChips. For more information, refer to Scan BeadChips.
6. View BeadChip images. For more information, refer to View Scan Results.
7. Remove BeadChips and shut down the iScan System. For more information, refer to Shut Down the iScan System.