Process Management

The Process Management screen displays temporary runs that are stored at /usr/local/illumina/runs. Identify each run by run date, name, and ID. Information such as the status of the run, secondary analysis, output folder, and cloud are also shown for each run. Select the run to view additional information on the workflow and quality metrics including, average percent ≥ Q30, total reads passing filter, and total yield. To delete runs and clear space, refer to Clear Hard Drive Space. To requeue on-instrument analysis, refer to Requeue a Run.

This section displays the status of the sequencing run:

• In Progress—Sequencing run in progress.
• Complete—Sequencing run is complete.
• Stopped—Sequencing run was stopped.
• Errored—Sequencing run has an error.

This section displays the status of the on-instrument DRAGEN secondary analysis. If analysis is occurring in BaseSpace Sequence Hub, this section displays N/A.

• Not Started—DRAGEN analysis not yet started.
• In Progress—DRAGEN analysis in progress.
• Stopped—DRAGEN analysis has been stopped.
• Errored—DRAGEN analysis has an error.
• Complete—DRAGEN analysis is complete.

This section displays the status of files being copied to the output folder:

• In Progress—Files are being copied to the output folder.
• Complete—Files have been successfully copied to the output folder.

The section displays the status of files being uploaded to BaseSpace Sequence Hub via the cloud:

• In Progress—The control software is uploading files to BaseSpace Sequence Hub.
• Complete—Files have been successfully uploaded to BaseSpace Sequence Hub.
• If the run is in progress, close the Process Management screen, wait approximately five minutes, and then reopen the screen.
• If the run is not in progress, power cycle the instrument, and then reopen the Process Management screen. Refer to Power Cycle the Instrument.